Genome-wide association analyses of agronomic traits and Striga hermonthica resistance in pearl millet

Hussein Shimelis Chris Ojiewo Abhishek Rathore (2023, [Artículo])

Pearl millet (Pennisetum glaucum [L.] R. Br.) is a nutrient-dense, relatively drought-tolerant cereal crop cultivated in dry regions worldwide. The crop is under-researched, and its grain yield is low (< 0.8 tons ha−1) and stagnant in the major production regions, including Burkina Faso. The low productivity of pearl millet is mainly attributable to a lack of improved varieties, Striga hermonthica [Sh] infestation, downy mildew infection, and recurrent heat and drought stress. Developing high-yielding and Striga-resistant pearl millet varieties that satisfy the farmers’ and market needs requires the identification of yield-promoting genes linked to economic traits to facilitate marker-assisted selection and gene pyramiding. The objective of this study was to undertake genome-wide association analyses of agronomic traits and Sh resistance among 150 pearl millet genotypes to identify genetic markers for marker-assisted breeding and trait introgression. The pearl millet genotypes were phenotyped in Sh hotspot fields and screen house conditions. Twenty-nine million single nucleotide polymorphisms (SNPs) initially generated from 345 pearl millet genotypes were filtered, and 256 K SNPs were selected and used in the present study. Phenotypic data were collected on days to flowering, plant height, number of tillers, panicle length, panicle weight, thousand-grain weight, grain weight, number of emerged Striga and area under the Striga number progress curve (ASNPC). Agronomic and Sh parameters were subjected to combined analysis of variance, while genome-wide association analysis was performed on phenotypic and SNPs data. Significant differences (P < 0.001) were detected among the assessed pearl millet genotypes for Sh parameters and agronomic traits. Further, there were significant genotype by Sh interaction for the number of Sh and ASNPC. Twenty-eight SNPs were significantly associated with a low number of emerged Sh located on chromosomes 1, 2, 3, 4, 6, and 7. Four SNPs were associated with days-to-50%-flowering on chromosomes 3, 5, 6, and 7, while five were associated with panicle length on chromosomes 2, 3, and 4. Seven SNPs were linked to thousand-grain weight on chromosomes 2, 3, and 6. The putative SNP markers associated with a low number of emerged Sh and agronomic traits in the assessed genotypes are valuable genomic resources for accelerated breeding and variety deployment of pearl millet with Sh resistance and farmer- and market-preferred agronomic traits.

High-Yielding Varieties Striga-Resistant Agronomic Parameters CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA GENOME-WIDE ASSOCIATION STUDIES STRIGA HERMONTHICA PEARL MILLET

Agro-morphological characterization and estimation of genetic parameters of spring maize hybrids in the inner plains of Far-West Nepal

Sandesh Thapa Darbin Joshi (2022, [Artículo])

Heat Resilient Maize Phenotypic Coefficient of Variation Heritable Traits CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA GENETIC PARAMETERS MAIZE HYBRIDS

Gender, rainfall endowment, and farmers’ heterogeneity in wheat trait preferences in Ethiopia

Hom Nath Gartaula Moti Jaleta (2024, [Artículo])

Wheat is a vital cereal crop for smallholders in Ethiopia. Despite over fifty years of research on wheat varietal development, consideration of gendered trait preferences in developing target product profiles for wheat breeding is limited. To address this gap, our study used sex-disaggregated survey data and historical rainfall trends from the major wheat-growing regions in Ethiopia. The findings indicated heterogeneity in trait preferences based on gender and rainfall endowment. Men respondents tended to prefer wheat traits with high straw yield and disease-resistance potential, while women showed a greater appreciation for wheat traits related to good taste and cooking quality. Farmers in high rainfall areas seemed to prioritize high straw yield and disease resistance traits, while those in low rainfall areas valued good adaptation traits more highly. Most of the correlation coefficients among the preferred traits were positive, indicating that farmers seek wheat varieties with traits that serve multiple purposes. Understanding men's and women's preferences and incorporating them in breeding and seed systems could contribute to the development of more targeted and effective wheat varieties that meet the diverse needs of men and women farmers in Ethiopia.

Trait Preferences Multivariate Probit Model CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA WHEAT AGRONOMIC CHARACTERS GENDER RAINFALL PROBIT ANALYSIS

Author Correction: genome-wide association analyses of agronomic traits and Striga hermonthica resistance in pearl millet

Hussein Shimelis Chris Ojiewo Abhishek Rathore (2023, [Artículo])

Agronomic Traits CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA GENOME-WIDE ASSOCIATION STUDIES STRIGA HERMONTHICA PEARL MILLET

Abiotic stress tolerance: Genetics, genomics, and breeding

Yunbi Xu Rajeev Varshney (2023, [Artículo])

Wheat Ancestors Modern Varieties Agronomic Performance CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA ABIOTIC STRESS GENETICS GENOMICS BREEDING GERMPLASM DROUGHT STRESS

Diseño y desarrollo de dispositivo de sujeción hidráulica para el proceso de brochado

Design and development of hydraulic clamping device for broaching process

Jorge Morales Carlos Álvarez Raúl Pérez Bustamante (2023, [Artículo])

Se desarrollo un dispositivo de sujeción hidráulica para el proceso de brochado de Brackets usados en los sistemas de frenado de automóviles, que permite reducir la variación del proceso de corte al mejorar el sistema de sujeción y con ello limitar la deformación de la pieza luego de haber sido procesada. Con este concepto de dispositivo es posible mejorar las condiciones del proceso de producción, como lo son: velocidad de corte, reducción de tiempo ciclo, rendimiento de la operación, reducción de costo de scrap, y reducción de tiempo muerto por sobre ajuste de proceso y cambio de modelo. Adicional, se hizo el desarrollo de un sistema de detección de pieza presente que permite captar cuando una pieza no es colocada correctamente en el dispositivo antes de iniciar el ciclo de corte, con esto es posible detectar fallas en el proceso que representen un riesgo para la operación. Durante la etapa de diseño se realizó una simulación del proceso de maquinado en condiciones extremas y condiciones ideales para medir la deformación de la pieza y con esto obtener los parámetros adecuados de corte para la puesta en marcha del dispositivo de sujeción. Para la validación del modelo, se realizó un estudio de habilidad de proceso Cpk y Ppk (acorde a los requerimientos de cliente) para evaluar que el nuevo proceso es eficiente y se encuentra bajo control.

A hydraulic clamping device was developed for the broaching process of Brackets used in automotivebraking systems, which allows reducing the variation of the cutting process by improving the clamping system andthereby limiting the deformation of the piece after having been processed. With this concept of device, it is possibleto improve the conditions of the production process such as: cutting speed, cycle time reduction, operationperformance, scrap cost reduction, and downtime reduction due to process over-adjustment and change over.Additionally, the development of a part detection system was made that allows capturing when a part is not correctlyplaced in the device before starting the cutting cycle, with this it is possible to detect failures in the process thatrepresent a risk to the operation. During the design stage, a simulation of the machining process was carried outin extreme conditions and ideal conditions to measure the deformation of the part and with this obtain theappropriate cutting parameters for the implementation of the clamping device. For the validation of the model, aCpk and Ppk process ability study was carried out (according to customer requirements) to assess that the newprocess is efficient and is under control.

Agradecemos al Centro de Investigación y Asistencia Técnica del Estado de Querétaro, A.C. (CIATEQ) y a la empresa donde fue desarrollado el proyecto por todas las facilidades otorgadas para la realización de dicho proyecto, de igual manera, agradecer por el apoyo brindado a todas las personas involucradas directa o indirectamente en el desarrollo de este trabajo.

Agradecimientos de autoría: Jorge Alberto Morales Martínez: Conceptualización; Metodología; Software; Análisis formal; Investigación; Adquisición de fondos; Recursos; Análisis de datos; Borrador original; Administración de proyecto, Revisión y edición. Carlos Marín: Conceptualización; Ideas; Análisis de datos; Software; Análisis formal y Supervisión. Raúl Pérez Bustamante: Revisión y edición.

Dispositivo de sujeción Proceso de brochado Bracket Sistema de frenado Parámetros de corte Cpk Ppk Clamping device Broaching process Brake system Cutting parameters INGENIERÍA Y TECNOLOGÍA CIENCIAS TECNOLÓGICAS OTRAS ESPECIALIDADES TECNOLÓGICAS OTRAS OTRAS

Development and demographic parameters of Fall Armyworm (Spodoptera frugiperda J.E. Smith) when feeding on rice (Oryza sativa)

Timothy Joseph Krupnik (2023, [Artículo])

Fall Armyworm (FAW), Spodoptera frugiperda (Lepidoptera: Noctuidae), native to the Americas, is a polyphagous insect pest feeding on more than 350 plant species. We studied the developmental and demographic parameters of the maize (Zea mays) strain of FAW on rice (Oryza sativa), and compared the results with its prime host, maize. The developmental period from egg to adult among rice varieties did not differ significantly; however, it did differ significantly between rice and maize, as feeding on rice rather than maize extends development duration of FAW larvae by 15.15%. FAW larvae collected and reared on maize were found to be of significantly higher weight than those reared on rice at two sequential dates of their development; pupal weight however was observed as statistically similar between these two host crops. Regardless of the host, female adults always emerged before males; in maize, female FAW appeared 3.36 days earlier than males. Females derived from rice had longer pre-oviposition periods and shorter oviposition ones than those derived from maize. In rice and maize, the age-specific fecundity rate (mx) peaked at 40 days and 33 days, respectively. When the Fall Armyworm consumed maize instead of rice, there was an increase in the reproduction rate (R 0), the intrinsic rate of natural increase (rm), and the finite rate of increase (λ). For instance, when FAW fed on rice, the rm value was 0.121, whereas it rose to 0.173 when FAW fed on maize. Feeding on rice instead of maize resulted in significantly longer mean length of generation (tG) and doubling time (tD) for the fall armyworm (FAW). This suggests that it took a longer time for the FAW population to double when it was fed rice under controlled greenhouse conditions. In summary, our research suggests that FAW can survive and complete its life cycle on rice plants and on multiple varieties of rice in Bangladesh. However, field verification is necessary before drawing strong conclusions as to the risk posed by FAW in rice. This requires additional studies of FAW and associated insect community dynamics under non-controlled conditions and in the context of multi-species interactions in Asian rice fields.

Invasive Pest Life Table Parameters CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA HOST PLANTS PESTS RICE SPODOPTERA FRUGIPERDA FALL ARMYWORMS

Waterhole detection using a vegetation index in desert bighorn sheep (Ovis canadensis cremnobates) habitat

Jonathan Gabriel Escobar Flores (2019, [Artículo])

In arid ecosystems, desert bighorn sheep are dependent on natural waterholes, particularly in summer when forage is scarce and environmental temperatures are high. To detect waterholes in Sierra Santa Isabel, which is the largest area of desert bighorn sheep habitat in the state of Baja California, Mexico, we used the normalized difference vegetation index (NDVI) and normalized difference water index (NDWI) from Sentinel-2 satellite images. Waterhole detection was based on the premise that sites with greater water availability, where NDVI was higher, can be identified by their density of vegetation greenness. For the detected waterholes, we estimated the escape terrain (presence of cliffs or steep, rocky slopes) around each by the vector ruggedness measure to determine their potential use by desert bighorn sheep based on the animals’ presence as documented by camera traps. We detected 14 waterholes with the NDVI of which 11 were known by land owners and 3 were unrecorded. Desert bighorn were not detected in waterholes with high values of escape terrain, i.e., flat areas. Waterhole detection by NDVI is a simple method, and with the assistance and knowledge of the inhabitants of the Sierra, it was possible to confirm the presence each waterhole in the field. © 2019 Escobar-Flores et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Article, bighorn sheep, environmental aspects and related phenomena, environmental parameters, habitat, Mexico, nonhuman, normalized difference vegetation index, normalized difference water index, water availability, waterhole, animal, bighorn sheep, CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CIENCIAS AGRARIAS CIENCIA FORESTAL CIENCIA FORESTAL

Effects of geostrophic kinetic energy on the distribution of mesopelagic fish larvae in the southern Gulf of California in summer/fall stratified seasons

FERNANDO CONTRERAS CATALA (2016, [Artículo])

Effects of geostrophic kinetic energy flux on the three-dimensional distribution of fish larvae of mesopelagic species (Vinciguerria lucetia, Diogenichthys laternatus, Benthosema panamense and Triphoturus mexicanus) in the southern Gulf of California during summer and fall seasons of stronger stratification were analyzed. The greatest larval abundance was found at sampling stations in geostrophic kinetic energy-poor areas (&lt;7.5 J/m3), where the distribution of the dominant species tended to be stratified. Larvae of V. lucetia (average abundance of 318 larvae/10m2) and B. panamense (174 larvae/10m2) were mostly located in and above the pycnocline (typically ∼ 40 m depth). In contrast, larvae of D. laternatus (60 larvae/10m2) were mainly located in and below the pycnocline. On the other hand, in sampling stations from geostrophic kinetic energy-rich areas (&gt; 21 J/m3), where mesoscale eddies were present, the larvae of the dominant species had low abundance and were spread more evenly through the water column, in spite of the water column stratification. For example, in a cyclonic eddy, V. lucetia larvae (34 larvae/10m2) extended their distribution to, at least, the limit of sampling 200 m depth below the pycnocline, while D. laternatus larvae (29 larvae/10m2) were found right up to the surface, both probably as a consequence mixing and secondary circulation in the eddy. Results showed that the level of the geostrophic kinetic energy flux affects the abundance and the three-dimensional distribution of mesopelagic fish larvae during the seasons of stronger stratification, indicating that areas with low geostrophic kinetic energy may be advantageous for feeding and development of mesopelagic fish larvae because of greater water column stability. © 2016 Contreras-Catala et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Article, autumn, Benthosema panamense, Diogenichthys laternatus, environmental factor, environmental parameters, fish, geographic distribution, geostrophic kinetic energy, hydrography, larva, nonhuman, population abundance, population dispersion, pop CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Freshwater exchanges and surface salinity in the Colombian basin, Caribbean Sea

Emilio Beier (2017, [Artículo])

Despite the heavy regional rainfall and considerable discharge of many rivers into the Colombian Basin, there have been few detailed studies about the dilution of Caribbean Surface Water and the variability of salinity in the southwestern Caribbean. An analysis of the precipitation, evaporation and runoff in relation to the climate variability demonstrates that although the salt balance in the Colombian Basin overall is in equilibrium, the area south of 12N is an important dilution sub-basin. In the southwest of the basin, in the region of the Panama-Colombia Gyre, Caribbean Sea Water is diluted by precipitation and runoff year round, while in the northeast, off La Guajira, its salinity increases from December to May by upwelling. At the interannual scale, continental runoff is related to El Niño Southern Oscillation, and precipitation and evaporation south of 12°N are related to the Caribbean Low Level Jet. During El Niño years the maximum salinification occurs in the dry season (December-February) while in La Niña years the maximum dilution (or freshening), reaching La Guajira Coastal Zone, occurs in the wet season (September-November). © 2017 Beier et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

sea water, fresh water, Article, Caribbean, dilution, dry season, El Nino, environmental parameters, evaporation, freshwater exchange, geographic distribution, molecular weight, oscillation, precipitation, river basin, salinity, seasonal variation, s CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA