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Transcriptome mining provides insights into cell wall metabolism and fiber lignification in Agave tequilana Weber

Luis Fernando Maceda Lopez ELSA BEATRIZ GONGORA CASTILLO Enrique Ibarra-Laclette DALIA C. MORAN VELAZQUEZ AMARANTA GIRON RAMIREZ Matthieu Bourdon José Luis Villalpando Aguilar Gabriela Chavez-Calvillo Toomer John Tang Parastoo Azadi Jorge Manuel Santamaría Fernández Itzel López-Rosas Mercedes G Lopez June Simpson FULGENCIO ALATORRE COBOS (2022, [Artículo])

Resilience of growing in arid and semiarid regions and a high capacity of accumulating sugar-rich biomass with low lignin percentages have placed Agave species as an emerging bioen-ergy crop. Although transcriptome sequencing of fiber-producing agave species has been explored, molecular bases that control wall cell biogenesis and metabolism in agave species are still poorly understood. Here, through RNAseq data mining, we reconstructed the cellulose biosynthesis pathway and the phenylpropanoid route producing lignin monomers in A. tequilana, and evaluated their expression patterns in silico and experimentally. Most of the orthologs retrieved showed differential expression levels when they were analyzed in different tissues with contrasting cellulose and lignin accumulation. Phylogenetic and structural motif analyses of putative CESA and CAD proteins allowed to identify those potentially involved with secondary cell wall formation. RT-qPCR assays revealed enhanced expression levels of AtqCAD5 and AtqCESA7 in parenchyma cells associated with extraxylary fibers, suggesting a mechanism of formation of sclerenchyma fibers in Agave similar to that reported for xylem cells in model eudicots. Overall, our results provide a framework for un-derstanding molecular bases underlying cell wall biogenesis in Agave species studying mechanisms involving in leaf fiber development in monocots. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.

AGAVE CELL WALLS LIGNOCELLULOSE CAD PROTEIN CESA PROTEIN SCLERENCHYMA BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA GENÉTICA GENÉTICA MOLECULAR DE PLANTAS GENÉTICA MOLECULAR DE PLANTAS

Soil CO2 efflux fluctuates in three different annual seasons in a semideciduous tropical forest in Yucatan, Mexico

El flujo de CO2 del suelo fluctúa en tres temporadas del año en un bosque tropical semideciduo de Yucatán, México

Fernando Arellano-Martín JUAN MANUEL DUPUY RADA ROBERTH ARMANDO US SANTAMARIA José Luis Andrade Torres (2022, [Artículo])

Tropical forest soils store a third of the global terrestrial carbon and control carbon dioxide (CO2) terrestrial effluxes to the atmosphere produced by root and microbial respiration. Soil CO2 efflux varies in time and space and is known to be strongly influenced by soil temperature and water content. However, little is known about the influence of seasonality on soil CO2 efflux, especially in tropical dry forests. This study evaluated soil CO2 efflux, soil temperature, and soil volumetric water content in a semideciduous tropical forest of the Yucatan Peninsula under two sites (flat areas close to and far from hills), and three seasons: dry, wet, and early dry (a transition between the rainy and dry seasons) throughout a year. Additionally, six 24-h periods of soil CO2 efflux were measured within these three seasons. The mean annual soil CO2 efflux was 4±2.2 μmol CO2 m-2 s-1, like the mean soil CO2 efflux during the early dry season. In all seasons, soil CO2 efflux increased linearly with soil moisture, which explained 45% of the spatial-temporal variation of soil CO2 efflux. Soil CO2 efflux was higher close to than far from hills in some months. The daily variation of soil CO2 efflux was less important than its spatial and seasonal variation likely due to small diel variations in temperature. Transition seasons are common in many tropical dry forests, and they should be taken into consideration to have a better understanding of the annual soil CO2 efflux, especially under future climate-change scenarios. © 2022 Mexican Society of Soil Science. All Rights Reserved.

EARLY DRY SEASON SOIL TEMPERATURE SOIL VOLUMETRIC WATER CONTENT TROPICAL DRY FOREST BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) ECOLOGÍA VEGETAL ECOLOGÍA VEGETAL

On-farm storage loss estimates of maize in Kenya using community survey methods

Hugo De Groote Anani Bruce (2023, [Artículo])

Maize is the most important staple in sub-Saharan Africa (SSA), with highly seasonal production. High storage losses affect food security, but good estimations are lacking. A new method using focus group discussions (FGDs) was tested with 121 communities (1439 farmers, 52% women) in Kenya's six maize-growing zones, to estimate the maize losses to storage pests and analyze farmer practices. As control strategies, half of the farmers used chemical pesticides (49%), while hermetic bags (16%) and botanicals (15%) were also popular. Relative loss from weevils in the long rains was estimated at 23%, in the short rains 18%, and annually 21%. Fewer farmers were affected by the larger grain borer (LGB) than by maize weevils: 42% in the long rainy season and 32% in the short rainy season; losses from LGB were also smaller: 19% in the long season, 17% in the short season, and 18% over the year. Total storage loss, from both species combined, was estimated at 36%, or 671,000 tonnes per year. The greatest losses occur in the humid areas, especially the moist mid-altitudes (56%), and with smaller loss in the drylands (20–23%). Extrapolating the point data and overlaying with the maize production map shows the geographic distribution of the losses, with the most important area found around Lake Victoria. FGDs provide convenient and cheap tools to estimate storage losses in representative communities, but a total loss estimate of 36% is higher than is found in other studies, so its accuracy and framing effects need to be assessed. We conclude that storage pests remain a major problem, especially in western Kenya, and that the use of environmentally friendly technologies such as hermetic storage and botanicals needs more attention, both by the public extension service and private agrodealers.

Larger Grain Borer Maize Weevil CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA MAIZE STORAGE LOSSES PESTS SURVEY METHODS

Coronin is a component of the endocytic collar of hyphae of neurospora crassa and is necessary for normal growth and morphogenesis

RAMON OSVALDO ECHAURI ESPINOSA (2012, [Artículo])

Coronin plays a major role in the organization and dynamics of actin in yeast. To investigate the role of coronin in a filamentous fungus (Neurospora crassa), we examined its subcellular localization using fluorescent proteins and the phenotypic consequences of coronin gene (crn-1) deletion in hyphal morphogenesis, Spitzenkörper behavior and endocytosis. Coronin-GFP was localized in patches, forming a subapical collar near the hyphal apex; significantly, it was absent from the apex. The subapical patches of coronin colocalized with fimbrin, Arp2/3 complex, and actin, altogether comprising the endocytic collar. Deletion of crn-1 resulted in reduced hyphal growth rates, distorted hyphal morphology, uneven wall thickness, and delayed establishment of polarity during germination; it also affected growth directionality and increased branching. The Spitzenkörper of Δcrn-1 mutant was unstable; it appeared and disappeared intermittently giving rise to periods of hyphoid-like and isotropic growth respectively. Uptake of FM4-64 in Δcrn-1 mutant indicated a partial disruption in endocytosis. These observations underscore coronin as an important component of F-actin remodeling in N. crassa. Although coronin is not essential in this fungus, its deletion influenced negatively the operation of the actin cytoskeleton involved in the orderly deployment of the apical growth apparatus, thus preventing normal hyphal growth and morphogenesis. © 2012 Echauri-Espinosa et al.

actin related protein 2-3 complex, F actin, fimbrin protein, fluorescent dye, fungal protein, fungal protein coronin, green fluorescent protein, unclassified drug, actin binding protein, coronin proteins, fungal protein, article, cell polarity, contr BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA MICROBIOLOGÍA MICROBIOLOGÍA