Parques vemos, biodiversidad no sabemos: el caso de la herpetofauna de la ciudad de Mérida

Roberto Carlos Barrientos Medina (2023, [Artículo])

La herpetofauna, constituida por las diferentes especies de anfibios y reptiles que se pueden encontrar en un hábitat, es un buen grupo indicador de diversidad, ya que presenta características de movilidad que los hacen ser más dependientes del hábitat (lugar en el que viven). En este trabajo se analizan los patrones de diversidad de los anfibios y reptiles que se pueden encontrar en los parques ecológicos de Mérida, en distintos niveles de expresión (alfa, beta y gamma). Los resultados señalan la influencia del grado de urbanización, de acuerdo con los patrones encontrados en las diversidades beta y gamma.

AMBIENTES ANTROPIZADOS ECOLOGIA URBANA NIVELES DE DIVERSIDAD PATRONES ECOLOGICOS YUCATAN BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA ANIMAL (ZOOLOGÍA) HERPETOLOGÍA HERPETOLOGÍA

Octopus maya white body show sex-specific transcriptomic profiles during the reproductive phase, with high differentiation in signaling pathways

Oscar Juárez (2019, [Artículo])

White bodies (WB), multilobulated soft tissue that wraps the optic tracts and optic lobes, have been considered the hematopoietic organ of the cephalopods. Its glandular appearance and its lobular morphology suggest that different parts of the WB may perform different functions, but a detailed functional analysis of the octopus WB is lacking. The aim of this study is to describe the transcriptomic profile of WB to better understand its functions, with emphasis on the difference between sexes during reproductive events. Then, validation via qPCR was performed using different tissues to find out tissue-specific transcripts. High differentiation in signaling pathways was observed in the comparison of female and male transcriptomic profiles. For instance, the expression of genes involved in the androgen receptor-signaling pathway were detected only in males, whereas estrogen receptor showed higher expression in females. Highly expressed genes in males enriched oxidation-reduction and apoptotic processes, which are related to the immune response. On the other hand, expression of genes involved in replicative senescence and the response to cortisol were only detected in females. Moreover, the transcripts with higher expression in females enriched a wide variety of signaling pathways mediated by molecules like neuropeptides, integrins, MAPKs and receptors like TNF and Toll-like. In addition, these putative neuropeptide transcripts, showed higher expression in females’ WB and were not detected in other analyzed tissues. These results suggest that the differentiation in signaling pathways in white bodies of O. maya influences the physiological dimorphism between females and males during the reproductive phase. © 2019 Juárez et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

androgen receptor, integrin, mitogen activated protein kinase, neuropeptide, transcriptome, tumor necrosis factor, argonaute protein, corticotropin releasing factor receptor, corticotropin releasing factor receptor 2, DEAD box protein, estradiol 17be BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA ANIMAL (ZOOLOGÍA) BIOLOGÍA ANIMAL (ZOOLOGÍA)

Noteworthy record of the kit fox (Vulpes macrotis) and its relation to physiographic characteristics in Baja California, Mexico

SARAHI SANDOVAL ESPINOZA MARIANA DELGADO FERNANDEZ Jonathan Gabriel Escobar Flores (2017, [Artículo])

"The kit fox (Vulpes macrotis) lives in sandy and shallow soils of the Pacific coastal plains and the ecoregion of San Felipe desert. The reports of this species are scarce and in Mexico it is listed as a threatened species. The populations of V. macrotis tend to decrease due to the change in the habitat to agricultural land, which has been one of the causes of the disappearance of kit fox populations in Mexico. As part of the project “Characterisation of water bodies in Sierra Santa Isabel, Baja California”, 12 camera traps were placed in six watering holes that are visited by wildlife from January to August 2015. Digital terrain elevation models were used to describe three variables: roughness, slope inclination and orientation; these variables are essential for the kit fox to build its burrows, catch its preys and escape from predators. The analyses were also carried out in localities where this carnivore had previously been recorded in Baja California. An analysis of variance was used to determine the existence of similarities or differences between the topographical characteristics of the historical localities and the new record. The first photographic record of the kit fox was obtained in one of the watering holes located within the Valle de los Cirios Flora and Fauna Protection Area. The analyses of variance confirmed that there are no significant differences between roughness (F(4, 780) = 0.11, P > 0.05), slope inclination (F(4, 1275) = 0.319, P > 0.05) and orientation (F(4, 15) = 0.41, P > 0.05), between the historical localities and the site where the new record was obtained. Other carnivores were also recorded in the watering hole, such as the cougar (Puma concolor), bobcat (Lynx rufus), coyote (Canis latrans) and gray fox (Urocyon cinereoargenteus). The presence of the kit fox is likely occasional in the watering hole, because the slopes are greater than 10 degrees and, therefore, these sites are unsuitable for the construction of burrows. However, flat sites with sandy substrates that empty into the Gulf of California occur at a distance of less than 5 km from the watering hole, which are therefore suitable to be inhabited by the kit fox. the analysis of topographic variables of the historical records coupled with camera traps jointly confirmed that the site with the new record has characteristics that are suitable for the kit fox."

"La zorra norteña (Vulpes macrotis) habita en los suelos arenosos y pocos profundos de las planicies costeras del pacifico y de la ecorregión del desierto de San Felipe. Los reportes de esta especie son escasos y en México esta enlistada como una especie amenazada. Las poblaciones de V. macrotis tienden a disminuir por la transformación del hábitat a tierras agrícolas, la cual ha sido una de las causantes de la extirpación de poblaciones de zorra norteña en México. Como parte del proyecto “Caracterización de los cuerpos de agua en Sierra Santa Isabel, Baja California”, se colocaron 12 cámaras trampa en seis aguajes que son visitados por la fauna silvestre de enero a agosto de 2015. Mediante modelos digitales de elevación del terreno se describieron tres variables: rugosidad, pendiente y orientación de las laderas, estas variables son esenciales para que la zorra norteña construya sus madrigueras, capture a sus presas y escape de sus depredadores. Los análisis también se realizaron en localidades que previamente se había registrado a este carnívoro en Baja California. Por medio de un análisis de varianza de una vía se determinó si existen similitudes o diferencias entre las características topográficas de las localidades históricas y el nuevo registro. En uno de los aguajes que se ubica dentro del Área de Protección de Flora y Fauna Valle de los Cirios, se obtuvo el primero registro fotográfico de la zorra norteña. Con los análisis de varianza se confirmó que no hay diferencias significativas entre la rugosidad (F(4, 780) = 0.11, P > 0.05), pendiente (F(4, 1275) = 0.319, P > 0.05) y orientación (F(4, 15) = 0.41, P > 0.05), entre las localidades históricas y el sitio donde se obtuvo el nuevo registro. En el aguaje también se registraron otro carnívoros, como el puma (Puma concolor), gato montés (Lynx rufus), coyote (Canis latrans) y zorra gris (Urocyon cinereoargenteus). La presencia de la zorra norteña posiblemente es ocasional en el aguaje, debido a que las pendientes en el lugar son mayores a 10 grados y por lo tanto estos sitios no son idóneos para la construcción de madrigueras. Sin embargo, a una distancia menor a 5 km del aguaje se encuentran sitios planos con sustratos arenosos que desembocan al Golfo de California, y por lo tanto son idóneos para que la zorra norteña sea residente de esos lugares..."

Vulpes macrotis, Baja California BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA ANIMAL (ZOOLOGÍA) MAMÍFEROS MAMÍFEROS

Suppression of breast tumor growth and metastasis by an engineered transcription factor

Adriana Beltran Lopez (2011, [Artículo])

Maspin is a tumor and metastasis suppressor playing an essential role as gatekeeper of tumor progression. It is highly expressed in epithelial cells but is silenced in the onset of metastatic disease by epigenetic mechanisms. Reprogramming of Maspin epigenetic silencing offers a therapeutic potential to lock metastatic progression. Herein we have investigated the ability of the Artificial Transcription Factor 126 (ATF-126) designed to upregulate the Maspin promoter to inhibit tumor progression in pre-established breast tumors in immunodeficient mice. ATF-126 was transduced in the aggressive, mesenchymal-like and triple negative breast cancer line, MDA-MB-231. Induction of ATF expression in vivo by Doxycycline resulted in 50% reduction in tumor growth and totally abolished tumor cell colonization. Genome-wide transcriptional profiles of ATF-induced cells revealed a gene signature that was found over-represented in estrogen receptor positive (ER+) "Normal-like" intrinsic subtype of breast cancer and in poorly aggressive, ER+ luminal A breast cancer cell lines. The comparison transcriptional profiles of ATF-126 and Maspin cDNA defined an overlapping 19-gene signature, comprising novel targets downstream the Maspin signaling cascade. Our data suggest that Maspin up-regulates downstream tumor and metastasis suppressor genes that are silenced in breast cancers, and are normally expressed in the neural system, including CARNS1, SLC8A2 and DACT3. In addition, ATF-126 and Maspin cDNA induction led to the re-activation of tumor suppressive miRNAs also expressed in neural cells, such as miR-1 and miR-34, and to the down-regulation of potential oncogenic miRNAs, such as miR-10b, miR-124, and miR-363. As expected from its over-representation in ER+ tumors, the ATF-126-gene signature predicted favorable prognosis for breast cancer patients. Our results describe for the first time an ATF able to reduce tumor growth and metastatic colonization by epigenetic reactivation of a dormant, normal-like, and more differentiated gene program. © 2011 Beltran et al.

artificial transcription factor 126, complementary DNA, doxycycline, estrogen receptor, maspin, microRNA, retrovirus vector, transcription factor, unclassified drug, estrogen receptor, serine proteinase inhibitor, SERPIN B5, SERPIN-B5, transcription BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA ANIMAL (ZOOLOGÍA) BIOLOGÍA ANIMAL (ZOOLOGÍA)

El génesis de la distopía. Elementos distópicos en el cuento “La última guerra” de Amado Nervo

Javier Martínez Javalois (2023, [Otro, Trabajo terminal, especialidad])

55 páginas. Especialización en Literatura Mexicana del Siglo XX.

Esta investigación recibió el apoyo del Sistema Nacional de Posgrados (SNP) del Consejo Nacional de Humanidades, Ciencias y Tecnologías (México). CONAHCYT.

El presente estudio tiene como objetivo principal analizar el cuento “La última guerra” (1906) de Amado Nervo (1870-1919), partiendo desde la literatura de ciencia ficción, en particular desde la temática de la distopía. En el cuento “La última guerra”, el autor evidencia el conflicto que se da entre la humanidad y una sociedad animal por el caos que ha provocado el dominio del hombre sobre el mundo y sobre las criaturas; ante la imposibilidad de estas últimas para revertir esta condición a lo largo del tiempo, se gesta una animadversión que desencadena una batalla entre ambas especies: los humanos y los animales. Este trabajo pretende mostrar el cambio en la sociedad ficcionalizada por Amado Nervo, el surgimiento y alcance máximo como sociedad y su crisis partiendo desde el punto inicial de la conflagración. La animadversión que acontece entre humanos y animales en un mundo cuya posesión está en disputa brinda elementos para un análisis de la antes mencionada sociedad distópica. A mi modo de ver, el acercamiento al análisis desde esta perspectiva resulta útil para entender cómo operan la desigualdad y la estratificación social en la estructura narrativa y el tiempo propuestos por Nervo en la ficción.

Nervo, Amado, 1870-1919--Criticism and interpretation. Dystopias in literature. Human-animal relationships--Fiction. Aggressive behavior in animals--Fiction. Distopías en la literatura. Relaciones hombre-animal en el arte. Animales en la literatura. PQ7297.N5 HUMANIDADES Y CIENCIAS DE LA CONDUCTA CIENCIAS DE LAS ARTES Y LAS LETRAS TEORÍA, ANÁLISIS Y CRÍTICA LITERARIAS

Do marine reserves increase prey for California sea lions and Pacific harbor seals?

ALEJANDRO ARIAS DEL RAZO (2019, [Artículo])

Community marine reserves are geographical areas closed to fishing activities, implemented and enforced by the same fishermen that fish around them. Their main objective is to recover commercial stocks of fish and invertebrates. While marine reserves have proven successful in many parts of the world, their success near important marine predator colonies, such as the California sea lion (Zalophus californianus) and the Pacific harbor seal (Phoca vitulina richardii), is yet to be analyzed. In response to the concerns expressed by local fishermen about the impact of the presence of pinnipeds on their communities’ marine reserves, we conducted underwater surveys around four islands in the Pacific west of the Baja California Peninsula: two without reserves (Todos Santos and San Roque); one with a recently established reserve (San Jeronimo); and, a fourth with reserves established eight years ago (Natividad). All these islands are subject to similar rates of exploitation by fishing cooperatives with exclusive rights. We estimated fish biomass and biodiversity in the seas around the islands, applying filters for potential California sea lion and harbor seal prey using known species from the literature. Generalized linear mixed models revealed that the age of the reserve has a significant positive effect on fish biomass, while the site (inside or outside of the reserve) did not, with a similar result found for the biomass of the prey of the California sea lion. Fish biodiversity was also higher around Natividad Island, while invertebrate biodiversity was higher around San Roque. These findings indicate that marine reserves increase overall fish diversity and biomass, despite the presence of top predators, even increasing the numbers of their potential prey. Community marine reserves may help to improve the resilience of marine mammals to climate-driven phenomena and maintain a healthy marine ecosystem for the benefit of both pinnipeds and fishermen. © 2019 Arias-Del-Razo et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Article, biodiversity, biomass, climate change, ecosystem resilience, environmental exploitation, fish stock, fishing, marine environment, marine invertebrate, nonhuman, Phoca vitulina, Pinnipedia, prey searching, Zalophus californianus, animal, biom BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA ANIMAL (ZOOLOGÍA) BIOLOGÍA ANIMAL (ZOOLOGÍA)

Protein retention assessment of four levels of poultry by-product substitution of fishmeal in rainbow trout (Oncorhynchus mykiss) diets using stable isotopes of nitrogen (δ15N) as natural tracers

DANIEL BADILLO ZAPATA (2014, [Artículo])

This is second part from an experiment where the nitrogen retention of poultry by-product meal (PBM) compared to fishmeal (FM) was evaluated using traditional indices. Here a quantitative method using stable isotope ratios of nitrogen (δ15N values) as natural tracers of nitrogen incorporation into fish biomass is assessed. Juvenile rainbow trout (Oncorhynchus mykiss) were fed for 80 days on isotopically distinct diets in which 0, 33, 66 and 100% of FM as main protein source was replaced by PBM. The diets were isonitrogenous, isolipidic and similar in gross energy content. Fish in all treatments reached isotopic equilibrium by the end of the experiment. Two-source isotope mixing models that incorporated the isotopic composition of FM and PBM as well as that of formulated feeds, empirically derived trophic discrimination factors and the isotopic composition of fish that had reached isotopic equilibrium to the diets were used to obtain a quantitative estimate of the retention of each source of nitrogen. Fish fed the diets with 33 and 66% replacement of FM by PBM retained poultry by-product meal roughly in proportion to its level of inclusion in the diets, whereas no differences were detected in the protein efficiency ratio. Coupled with the similar biomass gain of fishes fed the different diets, our results support the inclusion of PBM as replacement for fishmeal in aquaculture feeds. A re-feeding experiment in which all fish were fed a diet of 100% FM for 28 days indicated isotopic turnover occurred very fast, providing further support for the potential of isotopic ratios as tracers of the retention of specific protein sources into fish tissues. Stable isotope analysis is a useful tool for studies that seek to obtain quantitative estimates of the retention of different protein sources. © 2014 Badillo et al.

nitrogen 15, nitrogen, protein intake, animal behavior, animal experiment, animal food, animal tissue, aquaculture, Article, biomass, controlled study, energy metabolism, food composition, juvenile animal, nonhuman, poultry by product meal, protein a CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

The Pacific harbor seal gut microbiota in Mexico: Its relationship with diet and functional inferences

ARLETTE MARIMAR PACHECO SANDOVAL (2019, [Artículo])

Diet is a primary driver of the composition of gut microbiota and is considered one of the main routes of microbial colonization. Prey identification is fundamental for correlating the diet with the presence of particular microbial groups. The present study examined how diet influenced the composition and function of the gut microbiota of the Pacific harbor seal (Phoca vitulina richardii) in order to better understand the role of prey consumption in shaping its microbiota. This species is a good indicator of the quality of the local environment due to both its foraging and haul-out site fidelity. DNA was extracted from 20 fecal samples collected from five harbor seal colonies located in Baja California, Mexico. The V4 region of 16S rRNA gene was amplified and sequenced using the Illumina technology. Results showed that the gut microbiota of the harbor seals was dominated by the phyla Firmicutes (37%), Bacteroidetes (26%) and Fusobacteria (26%) and revealed significant differences in its composition among the colonies. Funtional analysis using the PICRUSt software suggests a high number of pathways involved in the basal metabolism, such as those for carbohydrates (22%) and amino acids (20%), and those related to the degradation of persistent environmental pollutants. In addition, a DNA metabarcoding analysis of the same samples, via the amplification and sequencing of the mtRNA 16S and rRNA 18S genes, was used to identify the prey consumed by harbor seals revealing the consumption of prey with mainly demersal habits. Functional redundancy in the seal gut microbiota was observed, irrespective of diet or location. Our results indicate that the frequency of occurrence of specific prey in the harbor seal diet plays an important role in shaping the composition of the gut microbiota of harbor seals by influencing the relative abundance of specific groups of gut microorganisms. A significant relationship was found among diet, gut microbiota composition and OTUs assigned to a particular metabolic pathway. © 2019 Pacheco-Sandoval et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

RNA 16S, RNA 18S, amino acid analysis, animal food, Article, bacterium colony, Bacteroidetes, basal metabolic rate, biodegradation, controlled study, DNA barcoding, feces analysis, Firmicutes, Fusobacteria, intestine flora, metabolism, Mexico, microb BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA ANIMAL (ZOOLOGÍA) BIOLOGÍA ANIMAL (ZOOLOGÍA)

Gamma-diversity partitioning of gobiid fishes (Teleostei: Gobiidae) ensemble along of Eastern Tropical Pacific: Biological inventory, latitudinal variation and species turnover

OMAR VALENCIA MENDEZ (2018, [Artículo])

Gobies are the most diverse marine fish family. Here, we analysed the gamma-diversity (γ-diversity) partitioning of gobiid fishes to evaluate the additive and multiplicative components of α and β-diversity, species replacement and species loss and gain, at four spatial scales: sample units, ecoregions, provinces and realms. The richness of gobies from the realm Eastern Tropical Pacific (ETP) is represented by 87 species. Along latitudinal and longitudinal gradients, we found that the γ-diversity is explained by the β-diversity at both spatial scales, ecoregions and provinces. At the ecoregion scale, species are diverse in the north (Cortezian ecoregion) and south (Panama Bight ecoregion) and between insular and coastal ecoregions. At the province scale, we found that the species turnover between the warm temperate Northeast Pacific (WTNP), Tropical East Pacific (TEaP) and the Galapagos Islands (Gala) was high, and the species nestedness was low. At the ecoregion scale, historical factors, and phylogenetic factors have influenced the hotspots of gobiid fish biodiversity, particularly in the Cortezian, Panama Bight and Cocos Island ecoregions, where species turnover is high across both latitudinal and longitudinal gradients. At the provincial level, we found that the contributions of the β-diversity from north to south, in the WTNP, TEaP and Gala were high, as result of the high number of unique species. Species turnover was also high at this scale, with a low contribution from species nestedness that was probably due to the low species/gene flow within the provinces. These results highlight the importance and successful inclusion of a cryptobenthic fish component in ecological and biogeographical studies. © 2018 Valencia-Méndez et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Article, biodiversity, biogeographic region, biogeography, gene flow, goby fish, nonhuman, phylogeny, species distribution, species diversity, taxonomic identification, teleost, animal, animal dispersal, fish, Pacific Ocean, phylogeography, Animal Di CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CIENCIAS AGRARIAS PECES Y FAUNA SILVESTRE PECES Y FAUNA SILVESTRE

Movements of scalloped hammerhead sharks (Sphyrna lewini) at Cocos Island, Costa Rica and between oceanic islands in the Eastern Tropical Pacific

Elena Nalesso (2019, [Artículo])

Many species of sharks form aggregations around oceanic islands, yet their levels of residency and their site specificity around these islands may vary. In some cases, the waters around oceanic islands have been designated as marine protected areas, yet the conservation value for threatened shark species will depend greatly on how much time they spend within these protected waters. Eighty-four scalloped hammerhead sharks (Sphyrna lewini Griffith & Smith), were tagged with acoustic transmitters at Cocos Island between 2005–2013. The average residence index, expressed as a proportion of days present in our receiver array at the island over the entire monitoring period, was 0.52±0.31, implying that overall the sharks are strongly associated with the island. Residency was significantly greater at Alcyone, a shallow seamount located 3.6 km offshore from the main island, than at the other sites. Timing of presence at the receiver locations was mostly during daytime hours. Although only a single individual from Cocos was detected on a region-wide array, nine hammerheads tagged at Galapagos and Malpelo travelled to Cocos. The hammerheads tagged at Cocos were more resident than those visiting from elsewhere, suggesting that the Galapagos and Malpelo populations may use Cocos as a navigational waypoint or stopover during seasonal migrations to the coastal Central and South America. Our study demonstrates the importance of oceanic islands for this species, and shows that they may form a network of hotspots in the Eastern Tropical Pacific. © 2019 Nalesso et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

article, Cocos Island, human, monitoring, nonhuman, resident, shark, South America, animal, Costa Rica, environmental protection, island (geological), movement (physiology), physiology, season, shark, Animals, Conservation of Natural Resources, Costa CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA